Static Analysis of Boolean Networks Based on Interaction Graphs: A Survey

نویسندگان

  • Loïc Paulevé
  • Adrien Richard
چکیده

Boolean networks are discrete dynamical systems extensively used to model biological regulatory networks. The dynamical analysis of these networks suffers from the combinatorial explosion of the state space, which grows exponentially with the number n of components. To face this problem, a classical approach consists in deducing from the interaction graph of the network, which only contains n vertices, some information on the dynamics of the network. In this paper, we present results in this topic, mainly by focusing on the influence of positive and negative feedbacks.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Effects of the Soil-Foundation-Structure Interaction on the Component Demand Modifier Factor of Concrete Gravity Beams based on ASCE 41-06 Standard

The aim of the present paper is to evaluate the influence of the Soil- Foundation- Structure Interaction (SFSI) effects on the component demand modifier factor of concrete gravity beams based on ASCE 41-06 standard. To this end, the beam on the nonlinear Winkler foundation approach is employed which is a simple and efficient method. At first, four sets of 3-, 6-, 10- and 15-storey concrete mome...

متن کامل

Analysis of Boolean Functions based on Interaction Graphs and their influence in System Biology

Interaction graphs provide an important qualitative modeling approach for System Biology. This paper presents a novel approach for construction of interaction graph with the help of Boolean function decomposition. Each decomposition part (Consisting of 2-bits) of the Boolean functions has some important significance. In the dynamics of a biological system, each variable or node is nothing but g...

متن کامل

Integrated Systems and Technologies: Mathematical Oncology Comparing Signaling Networks between Normal and Transformed Hepatocytes Using Discrete Logical Models

Substantial effort in recent years has been devoted to constructing and analyzing large-scale gene and protein networks on the basis of "omic" data and literature mining. These interaction graphs provide valuable insight into the topologies of complex biological networks but are rarely context specific and cannot be used to predict the responses of cell signaling proteins to specific ligands or...

متن کامل

Hepatocytes Using Discrete Logical Models Comparing Signaling Networks between Normal and Transformed

Substantial effort in recent years has been devoted to constructing and analyzing large-scale gene and protein networks on the basis of "omic" data and literature mining. These interaction graphs provide valuable insight into the topologies of complex biological networks but are rarely context specific and cannot be used to predict the responses of cell signaling proteins to specific ligands or...

متن کامل

Nonlinear Lining Design Considering Soil-Lining Interaction, Case Study: Gilavand Tunnel

There are various methods for the analysis of the interactional behavior of the surrounding land, using the lining structure which is the most common method of deigning lining structure tools for the static loads by using the hyper static methods. In recent years, there has been a question that depicts whether this method provides the best results in designing the tunnel structure or not.Due to...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Electr. Notes Theor. Comput. Sci.

دوره 284  شماره 

صفحات  -

تاریخ انتشار 2012